Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trbv20A0A0B4J1H5 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trbv20A0A0B4J1H5 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trbv20A0A0B4J1H5 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Trbv20A0A0B4J1H5 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trbv20A0A0B4J1H5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Trbv20A0A0B4J1H5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trbv20A0A0B4J1H5 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.26■■□□□ 1.31
Trbv20A0A0B4J1H5 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
Trbv20A0A0B4J1H5 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trbv20A0A0B4J1H5 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.24■■□□□ 1.31
Trbv20A0A0B4J1H5 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trbv20A0A0B4J1H5 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trbv20A0A0B4J1H5 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trbv20A0A0B4J1H5 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trbv20A0A0B4J1H5 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trbv20A0A0B4J1H5 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.3
Trbv20A0A0B4J1H5 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trbv20A0A0B4J1H5 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Trbv20A0A0B4J1H5 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trbv20A0A0B4J1H5 Gm25238-201ENSMUST00000174914 89 ntBASIC23.15■■□□□ 1.3
Trbv20A0A0B4J1H5 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trbv20A0A0B4J1H5 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trbv20A0A0B4J1H5 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Trbv20A0A0B4J1H5 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trbv20A0A0B4J1H5 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trbv20A0A0B4J1H5 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Trbv20A0A0B4J1H5 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trbv20A0A0B4J1H5 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trbv20A0A0B4J1H5 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Trbv20A0A0B4J1H5 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.01■■□□□ 1.27
Trbv20A0A0B4J1H5 Amer2-203ENSMUST00000225247 2662 ntBASIC23■■□□□ 1.27
Trbv20A0A0B4J1H5 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.99■■□□□ 1.27
Trbv20A0A0B4J1H5 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trbv20A0A0B4J1H5 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
Trbv20A0A0B4J1H5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.27
Trbv20A0A0B4J1H5 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.95■■□□□ 1.26
Trbv20A0A0B4J1H5 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trbv20A0A0B4J1H5 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
Trbv20A0A0B4J1H5 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trbv20A0A0B4J1H5 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Trbv20A0A0B4J1H5 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trbv20A0A0B4J1H5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC22.91■■□□□ 1.26
Trbv20A0A0B4J1H5 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trbv20A0A0B4J1H5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trbv20A0A0B4J1H5 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trbv20A0A0B4J1H5 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trbv20A0A0B4J1H5 Mipep-204ENSMUST00000225043 1548 ntBASIC22.87■■□□□ 1.25
Trbv20A0A0B4J1H5 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trbv20A0A0B4J1H5 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Trbv20A0A0B4J1H5 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Trbv20A0A0B4J1H5 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trbv20A0A0B4J1H5 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trbv20A0A0B4J1H5 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.81■■□□□ 1.24
Trbv20A0A0B4J1H5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
Trbv20A0A0B4J1H5 Rab21-202ENSMUST00000218831 843 ntBASIC22.78■■□□□ 1.24
Trbv20A0A0B4J1H5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.77■■□□□ 1.24
Trbv20A0A0B4J1H5 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trbv20A0A0B4J1H5 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.72■■□□□ 1.23
Trbv20A0A0B4J1H5 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trbv20A0A0B4J1H5 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.71■■□□□ 1.23
Trbv20A0A0B4J1H5 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
Trbv20A0A0B4J1H5 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trbv20A0A0B4J1H5 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trbv20A0A0B4J1H5 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trbv20A0A0B4J1H5 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms