Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ddx28Q9CWT6 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx28Q9CWT6 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddx28Q9CWT6 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx28Q9CWT6 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Ddx28Q9CWT6 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ddx28Q9CWT6 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx28Q9CWT6 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Gm15546-201ENSMUST00000122095 826 ntBASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Gm10232-201ENSMUST00000089221 720 ntBASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx28Q9CWT6 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ddx28Q9CWT6 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx28Q9CWT6 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Gm15820-201ENSMUST00000201566 728 ntBASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx28Q9CWT6 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx28Q9CWT6 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx28Q9CWT6 Gm10399-202ENSMUST00000202768 748 ntBASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx28Q9CWT6 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.57■□□□□ 0.56
Ddx28Q9CWT6 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms