Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sh3rf1Q69ZI1 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Gm22238-201ENSMUST00000175222 88 ntBASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sh3rf1Q69ZI1 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sh3rf1Q69ZI1 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sh3rf1Q69ZI1 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Gm13241-201ENSMUST00000094493 780 ntBASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sh3rf1Q69ZI1 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.3■□□□□ 0.84
Sh3rf1Q69ZI1 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sh3rf1Q69ZI1 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sh3rf1Q69ZI1 Gm9847-201ENSMUST00000052528 599 ntBASIC20.28■□□□□ 0.84
Sh3rf1Q69ZI1 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sh3rf1Q69ZI1 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Sh3rf1Q69ZI1 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Sh3rf1Q69ZI1 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sh3rf1Q69ZI1 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 183.3 ms