Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC32.03■■■□□ 2.72
Col17a1Q07563 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC32.03■■■□□ 2.72
Col17a1Q07563 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Col17a1Q07563 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC32.03■■■□□ 2.72
Col17a1Q07563 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
Col17a1Q07563 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC32.03■■■□□ 2.72
Col17a1Q07563 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Col17a1Q07563 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC32.02■■■□□ 2.72
Col17a1Q07563 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
Col17a1Q07563 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
Col17a1Q07563 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
Col17a1Q07563 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.72
Col17a1Q07563 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.71
Col17a1Q07563 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
Col17a1Q07563 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Col17a1Q07563 Gm6365-201ENSMUST00000054711 744 ntBASIC32.01■■■□□ 2.71
Col17a1Q07563 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
Col17a1Q07563 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
Col17a1Q07563 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC32■■■□□ 2.71
Col17a1Q07563 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Col17a1Q07563 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Col17a1Q07563 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Col17a1Q07563 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
Col17a1Q07563 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC31.98■■■□□ 2.71
Col17a1Q07563 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC31.98■■■□□ 2.71
Col17a1Q07563 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Col17a1Q07563 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
Col17a1Q07563 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Col17a1Q07563 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
Col17a1Q07563 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
Col17a1Q07563 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC31.97■■■□□ 2.71
Col17a1Q07563 Gm21362-201ENSMUST00000194272 928 ntBASIC31.97■■■□□ 2.71
Col17a1Q07563 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Col17a1Q07563 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC31.96■■■□□ 2.71
Col17a1Q07563 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC31.96■■■□□ 2.71
Col17a1Q07563 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.7
Col17a1Q07563 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Col17a1Q07563 Gm26524-201ENSMUST00000192339 390 ntBASIC31.95■■■□□ 2.7
Col17a1Q07563 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Col17a1Q07563 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.7
Col17a1Q07563 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
Col17a1Q07563 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col17a1Q07563 Gm9484-201ENSMUST00000195892 1159 ntBASIC31.94■■■□□ 2.7
Col17a1Q07563 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC31.94■■■□□ 2.7
Col17a1Q07563 Gm9987-201ENSMUST00000069768 567 ntBASIC31.94■■■□□ 2.7
Col17a1Q07563 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Col17a1Q07563 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC31.93■■■□□ 2.7
Col17a1Q07563 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Col17a1Q07563 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Col17a1Q07563 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col17a1Q07563 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col17a1Q07563 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col17a1Q07563 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC31.91■■■□□ 2.7
Col17a1Q07563 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Col17a1Q07563 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
Col17a1Q07563 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Col17a1Q07563 Gm27275-201ENSMUST00000184318 272 ntBASIC31.91■■■□□ 2.7
Col17a1Q07563 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Col17a1Q07563 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC31.9■■■□□ 2.7
Col17a1Q07563 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC31.89■■■□□ 2.7
Col17a1Q07563 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Col17a1Q07563 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC31.89■■■□□ 2.7
Col17a1Q07563 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Col17a1Q07563 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC31.88■■■□□ 2.69
Col17a1Q07563 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC31.88■■■□□ 2.69
Col17a1Q07563 Gm37055-201ENSMUST00000191866 133 ntBASIC31.88■■■□□ 2.69
Col17a1Q07563 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC31.88■■■□□ 2.69
Col17a1Q07563 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC31.88■■■□□ 2.69
Col17a1Q07563 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC31.87■■■□□ 2.69
Col17a1Q07563 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col17a1Q07563 Gm5643-201ENSMUST00000117081 966 ntBASIC31.86■■■□□ 2.69
Col17a1Q07563 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Col17a1Q07563 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Col17a1Q07563 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC31.85■■■□□ 2.69
Col17a1Q07563 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col17a1Q07563 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col17a1Q07563 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col17a1Q07563 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC31.85■■■□□ 2.69
Col17a1Q07563 Gm13146-201ENSMUST00000118508 780 ntBASIC31.84■■■□□ 2.69
Col17a1Q07563 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Col17a1Q07563 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Col17a1Q07563 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Col17a1Q07563 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Col17a1Q07563 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
Col17a1Q07563 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC31.84■■■□□ 2.69
Col17a1Q07563 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC31.84■■■□□ 2.69
Col17a1Q07563 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC31.84■■■□□ 2.69
Col17a1Q07563 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Col17a1Q07563 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Col17a1Q07563 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC31.83■■■□□ 2.69
Col17a1Q07563 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC31.83■■■□□ 2.69
Col17a1Q07563 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
Col17a1Q07563 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC31.82■■■□□ 2.69
Col17a1Q07563 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Col17a1Q07563 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC31.82■■■□□ 2.68
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms