Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8n-2A0A075B633 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Mir6236-201ENSMUST00000184437 123 ntBASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8n-2A0A075B633 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav8n-2A0A075B633 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trav8n-2A0A075B633 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trav8n-2A0A075B633 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.52■□□□□ 0.55
Trav8n-2A0A075B633 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trav8n-2A0A075B633 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8n-2A0A075B633 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8n-2A0A075B633 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8n-2A0A075B633 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8n-2A0A075B633 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8n-2A0A075B633 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8n-2A0A075B633 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8n-2A0A075B633 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Gm9988-201ENSMUST00000069786 435 ntBASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8n-2A0A075B633 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Gm10602-201ENSMUST00000098239 609 ntBASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.46■□□□□ 0.55
Trav8n-2A0A075B633 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.45■□□□□ 0.54
Trav8n-2A0A075B633 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms