Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc3Q9D6Y1 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.68■□□□□ 0.74
Ccdc3Q9D6Y1 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc3Q9D6Y1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc3Q9D6Y1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc3Q9D6Y1 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Gm8493-201ENSMUST00000196881 489 ntBASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.67■□□□□ 0.74
Ccdc3Q9D6Y1 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc3Q9D6Y1 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Gm8770-201ENSMUST00000121113 1109 ntBASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc3Q9D6Y1 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
Ccdc3Q9D6Y1 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc3Q9D6Y1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc3Q9D6Y1 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.64■□□□□ 0.73
Ccdc3Q9D6Y1 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
Ccdc3Q9D6Y1 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc3Q9D6Y1 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.63■□□□□ 0.73
Ccdc3Q9D6Y1 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gm7143-201ENSMUST00000222811 859 ntBASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.62■□□□□ 0.73
Ccdc3Q9D6Y1 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc3Q9D6Y1 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc3Q9D6Y1 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.6■□□□□ 0.73
Ccdc3Q9D6Y1 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.6■□□□□ 0.73
Ccdc3Q9D6Y1 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc3Q9D6Y1 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc3Q9D6Y1 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms