Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Vps28Q9D1C8 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Vps28Q9D1C8 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Vps28Q9D1C8 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Gm12821-201ENSMUST00000120022 600 ntBASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Vps28Q9D1C8 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Vps28Q9D1C8 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Gm43530-201ENSMUST00000195920 274 ntBASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Vps28Q9D1C8 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Vps28Q9D1C8 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Vps28Q9D1C8 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Vps28Q9D1C8 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Gm27454-201ENSMUST00000185090 204 ntBASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.61■□□□□ 0.89
Vps28Q9D1C8 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vps28Q9D1C8 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 104.5 ms