Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H2afb1S4R1E0 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
H2afb1S4R1E0 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
H2afb1S4R1E0 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
H2afb1S4R1E0 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
H2afb1S4R1E0 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Gm45444-201ENSMUST00000211394 898 ntBASIC18.33■□□□□ 0.52
H2afb1S4R1E0 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H2afb1S4R1E0 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
H2afb1S4R1E0 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.31■□□□□ 0.52
H2afb1S4R1E0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
H2afb1S4R1E0 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
H2afb1S4R1E0 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
H2afb1S4R1E0 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.28■□□□□ 0.52
H2afb1S4R1E0 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
H2afb1S4R1E0 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.27■□□□□ 0.52
H2afb1S4R1E0 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
H2afb1S4R1E0 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
H2afb1S4R1E0 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
H2afb1S4R1E0 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
H2afb1S4R1E0 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
H2afb1S4R1E0 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
H2afb1S4R1E0 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
H2afb1S4R1E0 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
H2afb1S4R1E0 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
H2afb1S4R1E0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
H2afb1S4R1E0 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
H2afb1S4R1E0 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
H2afb1S4R1E0 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
H2afb1S4R1E0 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms