Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nkx2-4Q9EQM3 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nkx2-4Q9EQM3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nkx2-4Q9EQM3 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Nkx2-4Q9EQM3 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nkx2-4Q9EQM3 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nkx2-4Q9EQM3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Gm10653-202ENSMUST00000139570 835 ntBASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.05■□□□□ 0.96
Nkx2-4Q9EQM3 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Nkx2-4Q9EQM3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx2-4Q9EQM3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx2-4Q9EQM3 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.03■□□□□ 0.96
Nkx2-4Q9EQM3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nkx2-4Q9EQM3 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nkx2-4Q9EQM3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Nkx2-4Q9EQM3 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Gm12441-201ENSMUST00000121806 588 ntBASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.01■□□□□ 0.95
Nkx2-4Q9EQM3 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Nkx2-4Q9EQM3 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms