Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.8■□□□□ 0.76
Ccdc3Q9D6Y1 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Ccdc3Q9D6Y1 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc3Q9D6Y1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc3Q9D6Y1 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.8■□□□□ 0.76
Ccdc3Q9D6Y1 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc3Q9D6Y1 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc3Q9D6Y1 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Gm18284-201ENSMUST00000172604 624 ntBASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc3Q9D6Y1 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc3Q9D6Y1 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Mir7075-201ENSMUST00000184187 82 ntBASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.75■□□□□ 0.75
Ccdc3Q9D6Y1 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc3Q9D6Y1 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc3Q9D6Y1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc3Q9D6Y1 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Gm43017-201ENSMUST00000198296 752 ntBASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Krt8-ps-201ENSMUST00000208495 945 ntBASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc3Q9D6Y1 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc3Q9D6Y1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms