Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps28Q9D1C8 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.8■□□□□ 0.92
Vps28Q9D1C8 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Vps28Q9D1C8 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.78■□□□□ 0.92
Vps28Q9D1C8 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.77■□□□□ 0.92
Vps28Q9D1C8 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Vps28Q9D1C8 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Vps28Q9D1C8 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Vps28Q9D1C8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Vps28Q9D1C8 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps28Q9D1C8 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.75■□□□□ 0.91
Vps28Q9D1C8 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.74■□□□□ 0.91
Vps28Q9D1C8 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Vps28Q9D1C8 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps28Q9D1C8 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Vps28Q9D1C8 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 190.4 ms