Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
Sh3rf2Q8BZT2 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf2Q8BZT2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf2Q8BZT2 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf2Q8BZT2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf2Q8BZT2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Sh3rf2Q8BZT2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Gm43173-201ENSMUST00000202246 593 ntBASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf2Q8BZT2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf2Q8BZT2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf2Q8BZT2 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Sh3rf2Q8BZT2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Sh3rf2Q8BZT2 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.63■□□□□ 0.89
Sh3rf2Q8BZT2 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Spcs1-204ENSMUST00000226782 949 ntBASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf2Q8BZT2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf2Q8BZT2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf2Q8BZT2 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf2Q8BZT2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms