Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.53■□□□□ 0.88
Sh3rf1Q69ZI1 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Gm7417-201ENSMUST00000192950 473 ntBASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Sh3rf1Q69ZI1 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Sh3rf1Q69ZI1 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
Sh3rf1Q69ZI1 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Sh3rf1Q69ZI1 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sh3rf1Q69ZI1 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.5■□□□□ 0.87
Sh3rf1Q69ZI1 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.5■□□□□ 0.87
Sh3rf1Q69ZI1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf1Q69ZI1 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sh3rf1Q69ZI1 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Sh3rf1Q69ZI1 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Sh3rf1Q69ZI1 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Sh3rf1Q69ZI1 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Sh3rf1Q69ZI1 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Sh3rf1Q69ZI1 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms