Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.23■□□□□ 0.99
Nkx2-4Q9EQM3 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Nkx2-4Q9EQM3 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.23■□□□□ 0.99
Nkx2-4Q9EQM3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.23■□□□□ 0.99
Nkx2-4Q9EQM3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx2-4Q9EQM3 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx2-4Q9EQM3 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-4Q9EQM3 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-4Q9EQM3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx2-4Q9EQM3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.21■□□□□ 0.99
Nkx2-4Q9EQM3 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Nkx2-4Q9EQM3 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.2■□□□□ 0.98
Nkx2-4Q9EQM3 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Gm12933-201ENSMUST00000120203 872 ntBASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx2-4Q9EQM3 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx2-4Q9EQM3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nkx2-4Q9EQM3 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Gm11421-201ENSMUST00000122124 294 ntBASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nkx2-4Q9EQM3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nkx2-4Q9EQM3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nkx2-4Q9EQM3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Nespas-201ENSMUST00000143738 1083 ntBASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Gm9988-201ENSMUST00000069786 435 ntBASIC21.14■□□□□ 0.97
Nkx2-4Q9EQM3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx2-4Q9EQM3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx2-4Q9EQM3 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx2-4Q9EQM3 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx2-4Q9EQM3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nkx2-4Q9EQM3 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Nkx2-4Q9EQM3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nkx2-4Q9EQM3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms