Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx28Q9CWT6 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Gm45444-201ENSMUST00000211394 898 ntBASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx28Q9CWT6 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Ddx28Q9CWT6 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Gm5921-201ENSMUST00000075898 882 ntBASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx28Q9CWT6 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.9■□□□□ 0.62
Ddx28Q9CWT6 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ddx28Q9CWT6 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
Ddx28Q9CWT6 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Ddx28Q9CWT6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx28Q9CWT6 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Ddx28Q9CWT6 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx28Q9CWT6 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.86■□□□□ 0.61
Ddx28Q9CWT6 Gm43566-201ENSMUST00000196851 808 ntBASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms