Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cdh23Q99PF4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdh23Q99PF4 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.32■■□□□ 1
Cdh23Q99PF4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.32■■□□□ 1
Cdh23Q99PF4 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Cdh23Q99PF4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdh23Q99PF4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdh23Q99PF4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.31■■□□□ 1
Cdh23Q99PF4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdh23Q99PF4 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.31■■□□□ 1
Cdh23Q99PF4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.31■■□□□ 1
Cdh23Q99PF4 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cdh23Q99PF4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.3■■□□□ 1
Cdh23Q99PF4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cdh23Q99PF4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.3■■□□□ 1
Cdh23Q99PF4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cdh23Q99PF4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cdh23Q99PF4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.3■■□□□ 1
Cdh23Q99PF4 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.29■■□□□ 1
Cdh23Q99PF4 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cdh23Q99PF4 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.29■■□□□ 1
Cdh23Q99PF4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdh23Q99PF4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.28■■□□□ 1
Cdh23Q99PF4 Smad6-203ENSMUST00000179458 273 ntBASIC21.28■■□□□ 1
Cdh23Q99PF4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.28■■□□□ 1
Cdh23Q99PF4 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh23Q99PF4 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh23Q99PF4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cdh23Q99PF4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Cdh23Q99PF4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh23Q99PF4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.28■■□□□ 1
Cdh23Q99PF4 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.28■■□□□ 1
Cdh23Q99PF4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh23Q99PF4 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Cdh23Q99PF4 Gm12527-201ENSMUST00000117967 564 ntBASIC21.27■■□□□ 1
Cdh23Q99PF4 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Cdh23Q99PF4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC21.27■□□□□ 0.99
Cdh23Q99PF4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh23Q99PF4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh23Q99PF4 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdh23Q99PF4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Cdh23Q99PF4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdh23Q99PF4 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdh23Q99PF4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.24■□□□□ 0.99
Cdh23Q99PF4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.24■□□□□ 0.99
Cdh23Q99PF4 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh23Q99PF4 AC158538.1-201ENSMUST00000225870 294 ntBASIC21.23■□□□□ 0.99
Cdh23Q99PF4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
Cdh23Q99PF4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.21■□□□□ 0.99
Cdh23Q99PF4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh23Q99PF4 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh23Q99PF4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh23Q99PF4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh23Q99PF4 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.2■□□□□ 0.99
Cdh23Q99PF4 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.2■□□□□ 0.99
Cdh23Q99PF4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Gm7977-201ENSMUST00000193787 748 ntBASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh23Q99PF4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 306.6 ms