Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Gm9959-201ENSMUST00000068277 390 ntBASIC21.27■■□□□ 1
Sh3rf3Q8C120 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf3Q8C120 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Sh3rf3Q8C120 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Sh3rf3Q8C120 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Iqck-206ENSMUST00000208658 2891 ntBASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.26■□□□□ 0.99
Sh3rf3Q8C120 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf3Q8C120 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Sh3rf3Q8C120 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf3Q8C120 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Etf1-202ENSMUST00000180351 108 ntBASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf3Q8C120 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf3Q8C120 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf3Q8C120 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf3Q8C120 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Sh3rf3Q8C120 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Sh3rf3Q8C120 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf3Q8C120 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf3Q8C120 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf3Q8C120 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sh3rf3Q8C120 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sh3rf3Q8C120 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Gm14117-201ENSMUST00000122417 843 ntBASIC21.17■□□□□ 0.98
Sh3rf3Q8C120 Gm7417-201ENSMUST00000192950 473 ntBASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms