Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Msh3P13705 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Msh3P13705 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Msh3P13705 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC22.65■■□□□ 1.22
Msh3P13705 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Msh3P13705 Gm45102-201ENSMUST00000207427 857 ntBASIC22.65■■□□□ 1.22
Msh3P13705 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Msh3P13705 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Msh3P13705 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Msh3P13705 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Msh3P13705 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Msh3P13705 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Msh3P13705 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Msh3P13705 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC22.64■■□□□ 1.21
Msh3P13705 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Msh3P13705 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
Msh3P13705 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Msh3P13705 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Msh3P13705 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Msh3P13705 Etf1-202ENSMUST00000180351 108 ntBASIC22.63■■□□□ 1.21
Msh3P13705 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Msh3P13705 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC22.63■■□□□ 1.21
Msh3P13705 AC152827.1-201ENSMUST00000221143 2189 ntBASIC22.63■■□□□ 1.21
Msh3P13705 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Msh3P13705 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Msh3P13705 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Msh3P13705 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC22.62■■□□□ 1.21
Msh3P13705 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Msh3P13705 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Msh3P13705 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Msh3P13705 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Msh3P13705 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Msh3P13705 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Msh3P13705 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Msh3P13705 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Msh3P13705 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.6■■□□□ 1.21
Msh3P13705 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC22.6■■□□□ 1.21
Msh3P13705 Gm9870-201ENSMUST00000063874 645 ntBASIC22.6■■□□□ 1.21
Msh3P13705 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Msh3P13705 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Msh3P13705 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Msh3P13705 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Msh3P13705 Gm22238-201ENSMUST00000175222 88 ntBASIC22.59■■□□□ 1.21
Msh3P13705 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.59■■□□□ 1.21
Msh3P13705 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Msh3P13705 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.59■■□□□ 1.21
Msh3P13705 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Msh3P13705 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
Msh3P13705 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Msh3P13705 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Msh3P13705 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.58■■□□□ 1.21
Msh3P13705 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Msh3P13705 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
Msh3P13705 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Msh3P13705 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Msh3P13705 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Msh3P13705 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Msh3P13705 Gm10657-201ENSMUST00000193528 1031 ntBASIC22.57■■□□□ 1.2
Msh3P13705 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Msh3P13705 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Msh3P13705 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Msh3P13705 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Msh3P13705 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC22.56■■□□□ 1.2
Msh3P13705 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.56■■□□□ 1.2
Msh3P13705 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC22.56■■□□□ 1.2
Msh3P13705 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Msh3P13705 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Msh3P13705 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Msh3P13705 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Msh3P13705 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC22.55■■□□□ 1.2
Msh3P13705 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC22.55■■□□□ 1.2
Msh3P13705 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Msh3P13705 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Msh3P13705 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Msh3P13705 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC22.54■■□□□ 1.2
Msh3P13705 Gm14117-201ENSMUST00000122417 843 ntBASIC22.54■■□□□ 1.2
Msh3P13705 Rps24-207ENSMUST00000224568 714 ntBASIC22.54■■□□□ 1.2
Msh3P13705 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Msh3P13705 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Msh3P13705 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC22.53■■□□□ 1.2
Msh3P13705 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC22.53■■□□□ 1.2
Msh3P13705 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Msh3P13705 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC22.52■■□□□ 1.2
Msh3P13705 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.52■■□□□ 1.2
Msh3P13705 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC22.52■■□□□ 1.2
Msh3P13705 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC22.52■■□□□ 1.2
Msh3P13705 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC22.52■■□□□ 1.2
Msh3P13705 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Msh3P13705 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms