Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn2aA0A0J9YTW6 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn2aA0A0J9YTW6 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Scn2aA0A0J9YTW6 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn2aA0A0J9YTW6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn2aA0A0J9YTW6 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Scn2aA0A0J9YTW6 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.59
Scn2aA0A0J9YTW6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn2aA0A0J9YTW6 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.76■□□□□ 0.59
Scn2aA0A0J9YTW6 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn2aA0A0J9YTW6 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Scn2aA0A0J9YTW6 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm27454-201ENSMUST00000185090 204 ntBASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm43530-201ENSMUST00000195920 274 ntBASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm9870-201ENSMUST00000063874 645 ntBASIC18.73■□□□□ 0.59
Scn2aA0A0J9YTW6 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn2aA0A0J9YTW6 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn2aA0A0J9YTW6 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn2aA0A0J9YTW6 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms