Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trbv1A0A0B4J1G7 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trbv1A0A0B4J1G7 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Gm10420-201ENSMUST00000121713 882 ntBASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 AC117245.4-201ENSMUST00000217388 1646 ntBASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trbv1A0A0B4J1G7 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trbv1A0A0B4J1G7 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Trbv1A0A0B4J1G7 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 AC152827.1-201ENSMUST00000221143 2189 ntBASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Cap2-205ENSMUST00000225824 1634 ntBASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Gm44949-201ENSMUST00000206423 1450 ntBASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trbv1A0A0B4J1G7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
Trbv1A0A0B4J1G7 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 AC164883.3-201ENSMUST00000227396 1774 ntBASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trbv1A0A0B4J1G7 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 270.2 ms