Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Nkx2-4Q9EQM3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx2-4Q9EQM3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx2-4Q9EQM3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Nkx2-4Q9EQM3 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Nkx2-4Q9EQM3 Gm43530-201ENSMUST00000195920 274 ntBASIC21.37■■□□□ 1.01
Nkx2-4Q9EQM3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Nkx2-4Q9EQM3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Nkx2-4Q9EQM3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.36■■□□□ 1.01
Nkx2-4Q9EQM3 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Nkx2-4Q9EQM3 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Nkx2-4Q9EQM3 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Nkx2-4Q9EQM3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx2-4Q9EQM3 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Nkx2-4Q9EQM3 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx2-4Q9EQM3 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx2-4Q9EQM3 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx2-4Q9EQM3 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.33■■□□□ 1
Nkx2-4Q9EQM3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx2-4Q9EQM3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Nkx2-4Q9EQM3 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Nkx2-4Q9EQM3 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.29■■□□□ 1
Nkx2-4Q9EQM3 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx2-4Q9EQM3 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nkx2-4Q9EQM3 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nkx2-4Q9EQM3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.27■■□□□ 1
Nkx2-4Q9EQM3 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.27■■□□□ 1
Nkx2-4Q9EQM3 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.27■□□□□ 0.99
Nkx2-4Q9EQM3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nkx2-4Q9EQM3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.26■□□□□ 0.99
Nkx2-4Q9EQM3 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Nkx2-4Q9EQM3 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nkx2-4Q9EQM3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.25■□□□□ 0.99
Nkx2-4Q9EQM3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.25■□□□□ 0.99
Nkx2-4Q9EQM3 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.25■□□□□ 0.99
Nkx2-4Q9EQM3 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nkx2-4Q9EQM3 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx2-4Q9EQM3 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms