Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
Vps28Q9D1C8 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.04■□□□□ 0.96
Vps28Q9D1C8 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps28Q9D1C8 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps28Q9D1C8 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps28Q9D1C8 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.02■□□□□ 0.96
Vps28Q9D1C8 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.02■□□□□ 0.96
Vps28Q9D1C8 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.02■□□□□ 0.96
Vps28Q9D1C8 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps28Q9D1C8 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Vps28Q9D1C8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Gm9847-201ENSMUST00000052528 599 ntBASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps28Q9D1C8 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
Vps28Q9D1C8 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21■□□□□ 0.95
Vps28Q9D1C8 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21■□□□□ 0.95
Vps28Q9D1C8 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Vps28Q9D1C8 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps28Q9D1C8 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps28Q9D1C8 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Gm12922-201ENSMUST00000120626 809 ntBASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps28Q9D1C8 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps28Q9D1C8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps28Q9D1C8 Gm13241-201ENSMUST00000094493 780 ntBASIC20.96■□□□□ 0.95
Vps28Q9D1C8 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps28Q9D1C8 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Vps28Q9D1C8 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Gm9870-201ENSMUST00000063874 645 ntBASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Vps28Q9D1C8 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps28Q9D1C8 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms