Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
Use1Q9CQ56 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Use1Q9CQ56 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.33■□□□□ 0.69
Use1Q9CQ56 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Use1Q9CQ56 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Use1Q9CQ56 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Use1Q9CQ56 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Use1Q9CQ56 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Use1Q9CQ56 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Use1Q9CQ56 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Use1Q9CQ56 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Use1Q9CQ56 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Use1Q9CQ56 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Use1Q9CQ56 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Use1Q9CQ56 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.3■□□□□ 0.68
Use1Q9CQ56 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Use1Q9CQ56 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Use1Q9CQ56 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Use1Q9CQ56 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.27■□□□□ 0.68
Use1Q9CQ56 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.27■□□□□ 0.68
Use1Q9CQ56 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Use1Q9CQ56 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Use1Q9CQ56 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Use1Q9CQ56 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Use1Q9CQ56 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 141.7 ms