Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim60Q8VI40 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.23■□□□□ 0.99
Trim60Q8VI40 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim60Q8VI40 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim60Q8VI40 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Trim60Q8VI40 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Trim60Q8VI40 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim60Q8VI40 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.21■□□□□ 0.99
Trim60Q8VI40 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
Trim60Q8VI40 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim60Q8VI40 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
Trim60Q8VI40 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.2■□□□□ 0.98
Trim60Q8VI40 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim60Q8VI40 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Trim60Q8VI40 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Trim60Q8VI40 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim60Q8VI40 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.19■□□□□ 0.98
Trim60Q8VI40 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim60Q8VI40 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim60Q8VI40 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim60Q8VI40 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim60Q8VI40 Notumos-201ENSMUST00000151998 2659 ntBASIC21.17■□□□□ 0.98
Trim60Q8VI40 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim60Q8VI40 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.15■□□□□ 0.98
Trim60Q8VI40 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim60Q8VI40 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim60Q8VI40 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Trim60Q8VI40 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim60Q8VI40 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim60Q8VI40 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms