Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Rtl3Q6P1Y1 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Rtl3Q6P1Y1 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rtl3Q6P1Y1 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rtl3Q6P1Y1 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Rtl3Q6P1Y1 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rtl3Q6P1Y1 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Gm12922-201ENSMUST00000120626 809 ntBASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rtl3Q6P1Y1 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rtl3Q6P1Y1 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Rtl3Q6P1Y1 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rtl3Q6P1Y1 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rtl3Q6P1Y1 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Rtl3Q6P1Y1 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
Rtl3Q6P1Y1 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rtl3Q6P1Y1 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rtl3Q6P1Y1 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rtl3Q6P1Y1 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rtl3Q6P1Y1 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rtl3Q6P1Y1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Rtl3Q6P1Y1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Gm9870-201ENSMUST00000063874 645 ntBASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rtl3Q6P1Y1 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rtl3Q6P1Y1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 196.2 ms