Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6-3Q5R1E6 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav6-3Q5R1E6 Notumos-201ENSMUST00000151998 2659 ntBASIC16.52■□□□□ 0.23
Trav6-3Q5R1E6 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav6-3Q5R1E6 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trav6-3Q5R1E6 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6-3Q5R1E6 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6-3Q5R1E6 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 AC152827.1-201ENSMUST00000221143 2189 ntBASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Gm45444-201ENSMUST00000211394 898 ntBASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Nsd1-203ENSMUST00000224156 1149 ntBASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6-3Q5R1E6 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC16.47■□□□□ 0.23
Trav6-3Q5R1E6 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6-3Q5R1E6 Gm5131-201ENSMUST00000212776 1238 ntBASIC16.46■□□□□ 0.23
Trav6-3Q5R1E6 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6-3Q5R1E6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6-3Q5R1E6 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6-3Q5R1E6 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
Trav6-3Q5R1E6 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Gm16464-201ENSMUST00000117815 1095 ntBASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trav6-3Q5R1E6 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav6-3Q5R1E6 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms