Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx56Q9D0R4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddx56Q9D0R4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddx56Q9D0R4 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddx56Q9D0R4 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Gm15820-201ENSMUST00000201566 728 ntBASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddx56Q9D0R4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.7■■□□□ 1.07
Ddx56Q9D0R4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ddx56Q9D0R4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddx56Q9D0R4 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddx56Q9D0R4 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Gm40881-201ENSMUST00000223397 166 ntBASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddx56Q9D0R4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx56Q9D0R4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Gm15546-201ENSMUST00000122095 826 ntBASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx56Q9D0R4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx56Q9D0R4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx56Q9D0R4 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx56Q9D0R4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Ddx56Q9D0R4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx56Q9D0R4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx56Q9D0R4 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx56Q9D0R4 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.63■■□□□ 1.05
Ddx56Q9D0R4 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx56Q9D0R4 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Ddx56Q9D0R4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 928.5 ms