Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ccdc28bQ8CEG5 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccdc28bQ8CEG5 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ccdc28bQ8CEG5 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccdc28bQ8CEG5 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.33■□□□□ 0.85
Ccdc28bQ8CEG5 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Ccdc28bQ8CEG5 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28bQ8CEG5 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28bQ8CEG5 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28bQ8CEG5 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.33■□□□□ 0.84
Ccdc28bQ8CEG5 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28bQ8CEG5 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28bQ8CEG5 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28bQ8CEG5 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28bQ8CEG5 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ccdc28bQ8CEG5 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28bQ8CEG5 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Ccdc28bQ8CEG5 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Gm9806-201ENSMUST00000051080 552 ntBASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28bQ8CEG5 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 Scarna2-201ENSMUST00000157560 414 ntBASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28bQ8CEG5 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ccdc28bQ8CEG5 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ccdc28bQ8CEG5 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28bQ8CEG5 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28bQ8CEG5 Gm16437-201ENSMUST00000025669 507 ntBASIC20.26■□□□□ 0.83
Ccdc28bQ8CEG5 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms