Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6-3Q5R1E6 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Gm5067-201ENSMUST00000170449 1009 ntBASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6-3Q5R1E6 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-3Q5R1E6 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-3Q5R1E6 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-3Q5R1E6 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6-3Q5R1E6 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6-3Q5R1E6 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
Trav6-3Q5R1E6 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.56■□□□□ 0.24
Trav6-3Q5R1E6 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6-3Q5R1E6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6-3Q5R1E6 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6-3Q5R1E6 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms