Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim63Q38HM4 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.12■□□□□ 0.33
Trim63Q38HM4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.11■□□□□ 0.33
Trim63Q38HM4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim63Q38HM4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim63Q38HM4 Gm17082-201ENSMUST00000166043 1091 ntBASIC17.09■□□□□ 0.33
Trim63Q38HM4 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim63Q38HM4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim63Q38HM4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim63Q38HM4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim63Q38HM4 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Trim63Q38HM4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim63Q38HM4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim63Q38HM4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim63Q38HM4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim63Q38HM4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim63Q38HM4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim63Q38HM4 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim63Q38HM4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim63Q38HM4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim63Q38HM4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.05■□□□□ 0.32
Trim63Q38HM4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim63Q38HM4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.04■□□□□ 0.32
Trim63Q38HM4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trim63Q38HM4 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.03■□□□□ 0.32
Trim63Q38HM4 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Trim63Q38HM4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms