Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ddx56Q9D0R4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.88■■□□□ 1.09
Ddx56Q9D0R4 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Ddx56Q9D0R4 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ddx56Q9D0R4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx56Q9D0R4 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx56Q9D0R4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Ddx56Q9D0R4 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx56Q9D0R4 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx56Q9D0R4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx56Q9D0R4 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddx56Q9D0R4 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.83■■□□□ 1.09
Ddx56Q9D0R4 Gm10399-202ENSMUST00000202768 748 ntBASIC21.83■■□□□ 1.09
Ddx56Q9D0R4 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
Ddx56Q9D0R4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Ddx56Q9D0R4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx56Q9D0R4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx56Q9D0R4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx56Q9D0R4 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx56Q9D0R4 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.81■■□□□ 1.08
Ddx56Q9D0R4 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.81■■□□□ 1.08
Ddx56Q9D0R4 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Ddx56Q9D0R4 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx56Q9D0R4 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx56Q9D0R4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Ddx56Q9D0R4 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Ddx56Q9D0R4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx56Q9D0R4 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx56Q9D0R4 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx56Q9D0R4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx56Q9D0R4 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx56Q9D0R4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Ddx56Q9D0R4 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Gm5812-201ENSMUST00000061073 957 ntBASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ddx56Q9D0R4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddx56Q9D0R4 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.75■■□□□ 1.07
Ddx56Q9D0R4 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.75■■□□□ 1.07
Ddx56Q9D0R4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms