Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Cpsf4Q8BQZ5 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cpsf4Q8BQZ5 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.08■□□□□ 0.8
Cpsf4Q8BQZ5 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cpsf4Q8BQZ5 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cpsf4Q8BQZ5 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cpsf4Q8BQZ5 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.06■□□□□ 0.8
Cpsf4Q8BQZ5 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cpsf4Q8BQZ5 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cpsf4Q8BQZ5 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cpsf4Q8BQZ5 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Cpsf4Q8BQZ5 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cpsf4Q8BQZ5 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cpsf4Q8BQZ5 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.02■□□□□ 0.8
Cpsf4Q8BQZ5 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.02■□□□□ 0.8
Cpsf4Q8BQZ5 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.02■□□□□ 0.8
Cpsf4Q8BQZ5 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
Cpsf4Q8BQZ5 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cpsf4Q8BQZ5 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cpsf4Q8BQZ5 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cpsf4Q8BQZ5 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cpsf4Q8BQZ5 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cpsf4Q8BQZ5 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cpsf4Q8BQZ5 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Gm16464-201ENSMUST00000117815 1095 ntBASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Gm10232-201ENSMUST00000089221 720 ntBASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cpsf4Q8BQZ5 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.99■□□□□ 0.79
Cpsf4Q8BQZ5 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cpsf4Q8BQZ5 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cpsf4Q8BQZ5 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms