Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 Gm43137-201ENSMUST00000198052 594 ntBASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shkbp1Q6P7W2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Shkbp1Q6P7W2 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Shkbp1Q6P7W2 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Shkbp1Q6P7W2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Shkbp1Q6P7W2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Shkbp1Q6P7W2 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.83■■□□□ 1.09
Shkbp1Q6P7W2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shkbp1Q6P7W2 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shkbp1Q6P7W2 Gm6139-201ENSMUST00000079261 882 ntBASIC21.83■■□□□ 1.09
Shkbp1Q6P7W2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Shkbp1Q6P7W2 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.08
Shkbp1Q6P7W2 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shkbp1Q6P7W2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Shkbp1Q6P7W2 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shkbp1Q6P7W2 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Shkbp1Q6P7W2 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shkbp1Q6P7W2 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Shkbp1Q6P7W2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.77■■□□□ 1.07
Shkbp1Q6P7W2 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Mir7075-201ENSMUST00000184187 82 ntBASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Shkbp1Q6P7W2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shkbp1Q6P7W2 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shkbp1Q6P7W2 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shkbp1Q6P7W2 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.72■■□□□ 1.07
Shkbp1Q6P7W2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shkbp1Q6P7W2 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shkbp1Q6P7W2 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms