Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
Cln3Q61124 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC23.15■■□□□ 1.3
Cln3Q61124 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cln3Q61124 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Cln3Q61124 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cln3Q61124 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cln3Q61124 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cln3Q61124 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cln3Q61124 Gm7143-201ENSMUST00000222811 859 ntBASIC23.14■■□□□ 1.29
Cln3Q61124 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Cln3Q61124 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cln3Q61124 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cln3Q61124 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC23.13■■□□□ 1.29
Cln3Q61124 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cln3Q61124 Gm21168-201ENSMUST00000199646 1096 ntBASIC23.13■■□□□ 1.29
Cln3Q61124 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cln3Q61124 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cln3Q61124 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cln3Q61124 Gm8770-201ENSMUST00000121113 1109 ntBASIC23.12■■□□□ 1.29
Cln3Q61124 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Cln3Q61124 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC23.12■■□□□ 1.29
Cln3Q61124 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cln3Q61124 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Cln3Q61124 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
Cln3Q61124 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cln3Q61124 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC23.1■■□□□ 1.29
Cln3Q61124 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Cln3Q61124 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
Cln3Q61124 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Cln3Q61124 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cln3Q61124 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Cln3Q61124 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Cln3Q61124 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cln3Q61124 Gm8493-201ENSMUST00000196881 489 ntBASIC23.09■■□□□ 1.29
Cln3Q61124 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cln3Q61124 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cln3Q61124 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Cln3Q61124 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
Cln3Q61124 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Cln3Q61124 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Cln3Q61124 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Cln3Q61124 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cln3Q61124 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cln3Q61124 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cln3Q61124 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cln3Q61124 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
Cln3Q61124 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Cln3Q61124 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cln3Q61124 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC23.07■■□□□ 1.28
Cln3Q61124 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
Cln3Q61124 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cln3Q61124 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Cln3Q61124 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC23.07■■□□□ 1.28
Cln3Q61124 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Cln3Q61124 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC23.06■■□□□ 1.28
Cln3Q61124 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Cln3Q61124 Gm12251-201ENSMUST00000117893 792 ntBASIC23.06■■□□□ 1.28
Cln3Q61124 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Cln3Q61124 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Cln3Q61124 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Cln3Q61124 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Cln3Q61124 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
Cln3Q61124 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC23.05■■□□□ 1.28
Cln3Q61124 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cln3Q61124 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
Cln3Q61124 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 Wdr70-203ENSMUST00000227371 1130 ntBASIC23.04■■□□□ 1.28
Cln3Q61124 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC23.04■■□□□ 1.28
Cln3Q61124 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Cln3Q61124 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cln3Q61124 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC23.03■■□□□ 1.28
Cln3Q61124 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC23.03■■□□□ 1.28
Cln3Q61124 Gm43173-201ENSMUST00000202246 593 ntBASIC23.03■■□□□ 1.28
Cln3Q61124 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Cln3Q61124 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cln3Q61124 Gm5576-201ENSMUST00000075809 1236 ntBASIC23.03■■□□□ 1.28
Cln3Q61124 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Cln3Q61124 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cln3Q61124 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC23.02■■□□□ 1.28
Cln3Q61124 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Cln3Q61124 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC23.02■■□□□ 1.28
Cln3Q61124 Gm5297-201ENSMUST00000198555 1171 ntBASIC23.02■■□□□ 1.28
Cln3Q61124 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Cln3Q61124 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Cln3Q61124 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms