Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Trbv20A0A0B4J1H5 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv20A0A0B4J1H5 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Gm44428-201ENSMUST00000204474 874 ntBASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv20A0A0B4J1H5 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trbv20A0A0B4J1H5 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv20A0A0B4J1H5 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Pkd1-207ENSMUST00000228550 1050 ntBASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv20A0A0B4J1H5 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv20A0A0B4J1H5 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trbv20A0A0B4J1H5 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv20A0A0B4J1H5 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv20A0A0B4J1H5 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv20A0A0B4J1H5 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.58■□□□□ 0.56
Trbv20A0A0B4J1H5 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv20A0A0B4J1H5 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv20A0A0B4J1H5 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Gm8503-201ENSMUST00000118131 455 ntBASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv20A0A0B4J1H5 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv20A0A0B4J1H5 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms