Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.68■□□□□ 0.74
Use1Q9CQ56 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Use1Q9CQ56 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Use1Q9CQ56 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Use1Q9CQ56 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Use1Q9CQ56 Gm11175-201ENSMUST00000116172 543 ntBASIC19.65■□□□□ 0.74
Use1Q9CQ56 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Use1Q9CQ56 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Use1Q9CQ56 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
Use1Q9CQ56 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Use1Q9CQ56 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Notumos-201ENSMUST00000151998 2659 ntBASIC19.64■□□□□ 0.73
Use1Q9CQ56 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.64■□□□□ 0.73
Use1Q9CQ56 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Use1Q9CQ56 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Use1Q9CQ56 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.62■□□□□ 0.73
Use1Q9CQ56 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.62■□□□□ 0.73
Use1Q9CQ56 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Use1Q9CQ56 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.61■□□□□ 0.73
Use1Q9CQ56 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.61■□□□□ 0.73
Use1Q9CQ56 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.61■□□□□ 0.73
Use1Q9CQ56 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Use1Q9CQ56 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Use1Q9CQ56 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Use1Q9CQ56 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Use1Q9CQ56 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.6■□□□□ 0.73
Use1Q9CQ56 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Use1Q9CQ56 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Gm5987-201ENSMUST00000196433 1151 ntBASIC19.59■□□□□ 0.73
Use1Q9CQ56 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Use1Q9CQ56 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Use1Q9CQ56 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Use1Q9CQ56 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.58■□□□□ 0.72
Use1Q9CQ56 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Use1Q9CQ56 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.58■□□□□ 0.72
Use1Q9CQ56 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Use1Q9CQ56 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.58■□□□□ 0.72
Use1Q9CQ56 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.58■□□□□ 0.72
Use1Q9CQ56 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Use1Q9CQ56 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms