Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28bQ8CEG5 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Ccdc28bQ8CEG5 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.6■□□□□ 0.89
Ccdc28bQ8CEG5 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28bQ8CEG5 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.6■□□□□ 0.89
Ccdc28bQ8CEG5 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28bQ8CEG5 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28bQ8CEG5 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28bQ8CEG5 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28bQ8CEG5 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28bQ8CEG5 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28bQ8CEG5 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28bQ8CEG5 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28bQ8CEG5 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.57■□□□□ 0.88
Ccdc28bQ8CEG5 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.56■□□□□ 0.88
Ccdc28bQ8CEG5 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc28bQ8CEG5 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28bQ8CEG5 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.54■□□□□ 0.88
Ccdc28bQ8CEG5 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28bQ8CEG5 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ccdc28bQ8CEG5 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28bQ8CEG5 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28bQ8CEG5 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc28bQ8CEG5 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc28bQ8CEG5 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc28bQ8CEG5 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc28bQ8CEG5 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.52■□□□□ 0.87
Ccdc28bQ8CEG5 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ccdc28bQ8CEG5 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ccdc28bQ8CEG5 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28bQ8CEG5 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28bQ8CEG5 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms