Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf4Q8BQZ5 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cpsf4Q8BQZ5 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf4Q8BQZ5 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Cpsf4Q8BQZ5 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Gm15546-201ENSMUST00000122095 826 ntBASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf4Q8BQZ5 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Cpsf4Q8BQZ5 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf4Q8BQZ5 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf4Q8BQZ5 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf4Q8BQZ5 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Gm15820-201ENSMUST00000201566 728 ntBASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf4Q8BQZ5 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Cpsf4Q8BQZ5 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf4Q8BQZ5 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf4Q8BQZ5 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Cpsf4Q8BQZ5 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf4Q8BQZ5 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf4Q8BQZ5 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cpsf4Q8BQZ5 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.08■□□□□ 0.81
Cpsf4Q8BQZ5 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cpsf4Q8BQZ5 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms