Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ube4aE9Q735 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ube4aE9Q735 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ube4aE9Q735 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC25.46■■□□□ 1.67
Ube4aE9Q735 Gm4430-201ENSMUST00000192413 1943 ntBASIC25.46■■□□□ 1.67
Ube4aE9Q735 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
Ube4aE9Q735 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
Ube4aE9Q735 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Ube4aE9Q735 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ube4aE9Q735 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ube4aE9Q735 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC25.45■■□□□ 1.66
Ube4aE9Q735 Serp2-204ENSMUST00000228055 705 ntBASIC25.45■■□□□ 1.66
Ube4aE9Q735 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ube4aE9Q735 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Ube4aE9Q735 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Ube4aE9Q735 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Ube4aE9Q735 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ube4aE9Q735 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ube4aE9Q735 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Ube4aE9Q735 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ube4aE9Q735 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
Ube4aE9Q735 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Ube4aE9Q735 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Krt8-ps-201ENSMUST00000208495 945 ntBASIC25.42■■□□□ 1.66
Ube4aE9Q735 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Ube4aE9Q735 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC25.41■■□□□ 1.66
Ube4aE9Q735 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Ube4aE9Q735 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ube4aE9Q735 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Ube4aE9Q735 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC25.4■■□□□ 1.66
Ube4aE9Q735 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ube4aE9Q735 Gm7143-201ENSMUST00000222811 859 ntBASIC25.4■■□□□ 1.66
Ube4aE9Q735 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC25.4■■□□□ 1.66
Ube4aE9Q735 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
Ube4aE9Q735 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
Ube4aE9Q735 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ube4aE9Q735 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ube4aE9Q735 Gm10657-201ENSMUST00000193528 1031 ntBASIC25.39■■□□□ 1.66
Ube4aE9Q735 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ube4aE9Q735 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ube4aE9Q735 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ube4aE9Q735 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ube4aE9Q735 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ube4aE9Q735 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ube4aE9Q735 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC25.36■■□□□ 1.65
Ube4aE9Q735 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ube4aE9Q735 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC25.36■■□□□ 1.65
Ube4aE9Q735 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
Ube4aE9Q735 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ube4aE9Q735 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Ube4aE9Q735 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ube4aE9Q735 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ube4aE9Q735 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ube4aE9Q735 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ube4aE9Q735 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Ube4aE9Q735 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ube4aE9Q735 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ube4aE9Q735 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ube4aE9Q735 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ube4aE9Q735 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ube4aE9Q735 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC25.33■■□□□ 1.65
Ube4aE9Q735 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ube4aE9Q735 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Ube4aE9Q735 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ube4aE9Q735 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Ube4aE9Q735 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ube4aE9Q735 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC25.31■■□□□ 1.64
Ube4aE9Q735 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ube4aE9Q735 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Ube4aE9Q735 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
Ube4aE9Q735 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Ube4aE9Q735 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms