Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm45102-201ENSMUST00000207427 857 ntBASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Gm14117-201ENSMUST00000122417 843 ntBASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Etf1-202ENSMUST00000180351 108 ntBASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.55■■□□□ 1.04
Vps28Q9D1C8 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Vps28Q9D1C8 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Vps28Q9D1C8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps28Q9D1C8 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps28Q9D1C8 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.52■■□□□ 1.04
Vps28Q9D1C8 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps28Q9D1C8 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.52■■□□□ 1.04
Vps28Q9D1C8 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps28Q9D1C8 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Vps28Q9D1C8 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Vps28Q9D1C8 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps28Q9D1C8 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps28Q9D1C8 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps28Q9D1C8 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Gm10399-202ENSMUST00000202768 748 ntBASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps28Q9D1C8 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Vps28Q9D1C8 Gm40881-201ENSMUST00000223397 166 ntBASIC21.47■■□□□ 1.03
Vps28Q9D1C8 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.47■■□□□ 1.03
Vps28Q9D1C8 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Vps28Q9D1C8 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Vps28Q9D1C8 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.46■■□□□ 1.03
Vps28Q9D1C8 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Vps28Q9D1C8 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Gm7417-201ENSMUST00000192950 473 ntBASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps28Q9D1C8 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps28Q9D1C8 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps28Q9D1C8 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
Vps28Q9D1C8 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps28Q9D1C8 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms