Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Use1Q9CQ56 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Use1Q9CQ56 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Use1Q9CQ56 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Use1Q9CQ56 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Use1Q9CQ56 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Use1Q9CQ56 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.77■□□□□ 0.76
Use1Q9CQ56 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Use1Q9CQ56 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Use1Q9CQ56 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.75■□□□□ 0.75
Use1Q9CQ56 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Gm14523-201ENSMUST00000117260 558 ntBASIC19.75■□□□□ 0.75
Use1Q9CQ56 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Gm27502-201ENSMUST00000183495 199 ntBASIC19.75■□□□□ 0.75
Use1Q9CQ56 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.75■□□□□ 0.75
Use1Q9CQ56 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Use1Q9CQ56 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Use1Q9CQ56 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Use1Q9CQ56 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Use1Q9CQ56 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Use1Q9CQ56 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.72■□□□□ 0.75
Use1Q9CQ56 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Use1Q9CQ56 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Use1Q9CQ56 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Use1Q9CQ56 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.71■□□□□ 0.75
Use1Q9CQ56 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Use1Q9CQ56 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Gm7332-201ENSMUST00000118351 454 ntBASIC19.7■□□□□ 0.74
Use1Q9CQ56 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Use1Q9CQ56 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.69■□□□□ 0.74
Use1Q9CQ56 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
Use1Q9CQ56 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Use1Q9CQ56 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms