Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC23.22■■□□□ 1.31
Prpf40aQ9R1C7 Gm32051-202ENSMUST00000197905 2385 ntBASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Gm45444-201ENSMUST00000211394 898 ntBASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Prpf40aQ9R1C7 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Prpf40aQ9R1C7 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Prpf40aQ9R1C7 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Prpf40aQ9R1C7 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Prpf40aQ9R1C7 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Prpf40aQ9R1C7 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC23.19■■□□□ 1.3
Prpf40aQ9R1C7 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Nsd1-206ENSMUST00000224918 1001 ntBASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC23.18■■□□□ 1.3
Prpf40aQ9R1C7 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Prpf40aQ9R1C7 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
Prpf40aQ9R1C7 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Prpf40aQ9R1C7 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Prpf40aQ9R1C7 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Prpf40aQ9R1C7 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Prpf40aQ9R1C7 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC23.14■■□□□ 1.3
Prpf40aQ9R1C7 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Prpf40aQ9R1C7 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Prpf40aQ9R1C7 Gm43566-201ENSMUST00000196851 808 ntBASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Prpf40aQ9R1C7 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Prpf40aQ9R1C7 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Prpf40aQ9R1C7 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Prpf40aQ9R1C7 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC23.13■■□□□ 1.29
Prpf40aQ9R1C7 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Prpf40aQ9R1C7 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Prpf40aQ9R1C7 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC23.12■■□□□ 1.29
Prpf40aQ9R1C7 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Prpf40aQ9R1C7 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Prpf40aQ9R1C7 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
Prpf40aQ9R1C7 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms