Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lsm1Q8VC85 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lsm1Q8VC85 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lsm1Q8VC85 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lsm1Q8VC85 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lsm1Q8VC85 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Lsm1Q8VC85 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
Lsm1Q8VC85 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lsm1Q8VC85 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lsm1Q8VC85 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.23■□□□□ 0.83
Lsm1Q8VC85 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Lsm1Q8VC85 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.21■□□□□ 0.83
Lsm1Q8VC85 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.21■□□□□ 0.83
Lsm1Q8VC85 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lsm1Q8VC85 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.19■□□□□ 0.82
Lsm1Q8VC85 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lsm1Q8VC85 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lsm1Q8VC85 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.18■□□□□ 0.82
Lsm1Q8VC85 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lsm1Q8VC85 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lsm1Q8VC85 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms