Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim35Q8C006 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim35Q8C006 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.33■■□□□ 1
Trim35Q8C006 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim35Q8C006 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.32■■□□□ 1
Trim35Q8C006 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim35Q8C006 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.31■■□□□ 1
Trim35Q8C006 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim35Q8C006 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim35Q8C006 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.3■■□□□ 1
Trim35Q8C006 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim35Q8C006 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
Trim35Q8C006 Gm12106-201ENSMUST00000116006 1200 ntBASIC21.29■■□□□ 1
Trim35Q8C006 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Trim35Q8C006 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim35Q8C006 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim35Q8C006 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim35Q8C006 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim35Q8C006 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.28■■□□□ 1
Trim35Q8C006 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.28■■□□□ 1
Trim35Q8C006 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim35Q8C006 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim35Q8C006 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim35Q8C006 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.27■■□□□ 1
Trim35Q8C006 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim35Q8C006 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC21.27■■□□□ 1
Trim35Q8C006 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim35Q8C006 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim35Q8C006 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Trim35Q8C006 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim35Q8C006 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Trim35Q8C006 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim35Q8C006 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim35Q8C006 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim35Q8C006 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim35Q8C006 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Trim35Q8C006 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
Trim35Q8C006 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim35Q8C006 Gm6546-201ENSMUST00000192096 766 ntBASIC21.25■□□□□ 0.99
Trim35Q8C006 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim35Q8C006 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trim35Q8C006 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.25■□□□□ 0.99
Trim35Q8C006 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim35Q8C006 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim35Q8C006 Gm43566-201ENSMUST00000196851 808 ntBASIC21.24■□□□□ 0.99
Trim35Q8C006 Gm45444-201ENSMUST00000211394 898 ntBASIC21.24■□□□□ 0.99
Trim35Q8C006 Gm5812-201ENSMUST00000061073 957 ntBASIC21.24■□□□□ 0.99
Trim35Q8C006 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim35Q8C006 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.23■□□□□ 0.99
Trim35Q8C006 Gm42660-201ENSMUST00000197733 947 ntBASIC21.23■□□□□ 0.99
Trim35Q8C006 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Trim35Q8C006 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim35Q8C006 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC21.22■□□□□ 0.99
Trim35Q8C006 AV099323-201ENSMUST00000124336 921 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim35Q8C006 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Trim35Q8C006 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim35Q8C006 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim35Q8C006 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trim35Q8C006 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC21.21■□□□□ 0.99
Trim35Q8C006 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC21.21■□□□□ 0.99
Trim35Q8C006 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
Trim35Q8C006 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim35Q8C006 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
Trim35Q8C006 Olfr1233-203ENSMUST00000215469 1205 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trim35Q8C006 Olfr1233-204ENSMUST00000216561 1192 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trim35Q8C006 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim35Q8C006 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim35Q8C006 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim35Q8C006 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim35Q8C006 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim35Q8C006 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms