Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Sh3rf1Q69ZI1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf1Q69ZI1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Sh3rf1Q69ZI1 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sh3rf1Q69ZI1 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sh3rf1Q69ZI1 Gm15546-201ENSMUST00000122095 826 ntBASIC21.33■■□□□ 1.01
Sh3rf1Q69ZI1 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Sh3rf1Q69ZI1 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.33■■□□□ 1
Sh3rf1Q69ZI1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Sh3rf1Q69ZI1 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Sh3rf1Q69ZI1 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.31■■□□□ 1
Sh3rf1Q69ZI1 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf1Q69ZI1 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf1Q69ZI1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC21.3■■□□□ 1
Sh3rf1Q69ZI1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf1Q69ZI1 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf1Q69ZI1 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sh3rf1Q69ZI1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Sh3rf1Q69ZI1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sh3rf1Q69ZI1 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sh3rf1Q69ZI1 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sh3rf1Q69ZI1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sh3rf1Q69ZI1 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Sh3rf1Q69ZI1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sh3rf1Q69ZI1 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Gm43592-201ENSMUST00000196922 1165 ntBASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.25■□□□□ 0.99
Sh3rf1Q69ZI1 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sh3rf1Q69ZI1 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sh3rf1Q69ZI1 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sh3rf1Q69ZI1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 136.1 ms