Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn2aA0A0J9YTW6 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn2aA0A0J9YTW6 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn2aA0A0J9YTW6 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn2aA0A0J9YTW6 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn2aA0A0J9YTW6 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Scn2aA0A0J9YTW6 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn2aA0A0J9YTW6 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.51■□□□□ 0.71
Scn2aA0A0J9YTW6 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Scn2aA0A0J9YTW6 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn2aA0A0J9YTW6 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn2aA0A0J9YTW6 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn2aA0A0J9YTW6 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm10399-202ENSMUST00000202768 748 ntBASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn2aA0A0J9YTW6 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scn2aA0A0J9YTW6 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn2aA0A0J9YTW6 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.45■□□□□ 0.7
Scn2aA0A0J9YTW6 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Scn2aA0A0J9YTW6 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn2aA0A0J9YTW6 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn2aA0A0J9YTW6 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn2aA0A0J9YTW6 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.43■□□□□ 0.7
Scn2aA0A0J9YTW6 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn2aA0A0J9YTW6 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn2aA0A0J9YTW6 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn2aA0A0J9YTW6 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.43■□□□□ 0.7
Scn2aA0A0J9YTW6 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Gm45102-201ENSMUST00000207427 857 ntBASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn2aA0A0J9YTW6 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Rps24-207ENSMUST00000224568 714 ntBASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn2aA0A0J9YTW6 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn2aA0A0J9YTW6 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scn2aA0A0J9YTW6 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn2aA0A0J9YTW6 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn2aA0A0J9YTW6 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Scn2aA0A0J9YTW6 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.39■□□□□ 0.69
Scn2aA0A0J9YTW6 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn2aA0A0J9YTW6 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn2aA0A0J9YTW6 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn2aA0A0J9YTW6 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms