Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav8n-2A0A075B633 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav8n-2A0A075B633 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav8n-2A0A075B633 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Trav8n-2A0A075B633 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav8n-2A0A075B633 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav8n-2A0A075B633 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav8n-2A0A075B633 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav8n-2A0A075B633 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav8n-2A0A075B633 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trav8n-2A0A075B633 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trav8n-2A0A075B633 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav8n-2A0A075B633 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav8n-2A0A075B633 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Gm9870-201ENSMUST00000063874 645 ntBASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav8n-2A0A075B633 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav8n-2A0A075B633 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav8n-2A0A075B633 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav8n-2A0A075B633 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms