Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.15■■■□□ 2.42
Prpf40aQ9R1C7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Prpf40aQ9R1C7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Prpf40aQ9R1C7 Gm25262-201ENSMUST00000174934 133 ntBASIC30.13■■■□□ 2.41
Prpf40aQ9R1C7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Prpf40aQ9R1C7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Prpf40aQ9R1C7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.09■■■□□ 2.41
Prpf40aQ9R1C7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Prpf40aQ9R1C7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Prpf40aQ9R1C7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Prpf40aQ9R1C7 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Prpf40aQ9R1C7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Prpf40aQ9R1C7 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC29.94■■■□□ 2.38
Prpf40aQ9R1C7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Prpf40aQ9R1C7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.92■■■□□ 2.38
Prpf40aQ9R1C7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Prpf40aQ9R1C7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
Prpf40aQ9R1C7 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.86■■■□□ 2.37
Prpf40aQ9R1C7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Prpf40aQ9R1C7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Prpf40aQ9R1C7 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
Prpf40aQ9R1C7 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.81■■■□□ 2.36
Prpf40aQ9R1C7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Prpf40aQ9R1C7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
Prpf40aQ9R1C7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Prpf40aQ9R1C7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Prpf40aQ9R1C7 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.76■■■□□ 2.35
Prpf40aQ9R1C7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
Prpf40aQ9R1C7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.64■■■□□ 2.34
Prpf40aQ9R1C7 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
Prpf40aQ9R1C7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Prpf40aQ9R1C7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Prpf40aQ9R1C7 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Prpf40aQ9R1C7 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Prpf40aQ9R1C7 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
Prpf40aQ9R1C7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
Prpf40aQ9R1C7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Prpf40aQ9R1C7 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.46■■■□□ 2.31
Prpf40aQ9R1C7 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.31
Prpf40aQ9R1C7 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC29.44■■■□□ 2.3
Prpf40aQ9R1C7 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Prpf40aQ9R1C7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.44■■■□□ 2.3
Prpf40aQ9R1C7 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Prpf40aQ9R1C7 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Prpf40aQ9R1C7 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
Prpf40aQ9R1C7 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Prpf40aQ9R1C7 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Prpf40aQ9R1C7 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC29.33■■■□□ 2.29
Prpf40aQ9R1C7 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Prpf40aQ9R1C7 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Prpf40aQ9R1C7 Zfp131-207ENSMUST00000224946 1783 ntBASIC29.32■■■□□ 2.28
Prpf40aQ9R1C7 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Prpf40aQ9R1C7 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.26■■■□□ 2.27
Prpf40aQ9R1C7 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Prpf40aQ9R1C7 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
Prpf40aQ9R1C7 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Prpf40aQ9R1C7 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
Prpf40aQ9R1C7 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.21■■■□□ 2.27
Prpf40aQ9R1C7 Gm26115-201ENSMUST00000175605 87 ntBASIC29.2■■■□□ 2.26
Prpf40aQ9R1C7 Gm17082-201ENSMUST00000166043 1091 ntBASIC29.17■■■□□ 2.26
Prpf40aQ9R1C7 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Prpf40aQ9R1C7 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Prpf40aQ9R1C7 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
Prpf40aQ9R1C7 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Prpf40aQ9R1C7 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Prpf40aQ9R1C7 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Prpf40aQ9R1C7 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Prpf40aQ9R1C7 Gm27322-201ENSMUST00000184007 104 ntBASIC29.05■■■□□ 2.24
Prpf40aQ9R1C7 AL845457.1-201ENSMUST00000197244 68 ntBASIC29.05■■■□□ 2.24
Prpf40aQ9R1C7 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
Prpf40aQ9R1C7 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
Prpf40aQ9R1C7 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Prpf40aQ9R1C7 Gm8109-201ENSMUST00000194076 746 ntBASIC29.04■■■□□ 2.24
Prpf40aQ9R1C7 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.99■■■□□ 2.23
Prpf40aQ9R1C7 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.99■■■□□ 2.23
Prpf40aQ9R1C7 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Prpf40aQ9R1C7 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Prpf40aQ9R1C7 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Prpf40aQ9R1C7 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC28.97■■■□□ 2.23
Prpf40aQ9R1C7 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Prpf40aQ9R1C7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC28.96■■■□□ 2.23
Prpf40aQ9R1C7 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Prpf40aQ9R1C7 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
Prpf40aQ9R1C7 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Prpf40aQ9R1C7 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Prpf40aQ9R1C7 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
Prpf40aQ9R1C7 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28.77■■■□□ 2.2
Prpf40aQ9R1C7 AC166822.3-201ENSMUST00000227394 661 ntBASIC28.77■■■□□ 2.2
Prpf40aQ9R1C7 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Prpf40aQ9R1C7 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Prpf40aQ9R1C7 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Prpf40aQ9R1C7 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Prpf40aQ9R1C7 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.19
Prpf40aQ9R1C7 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
Prpf40aQ9R1C7 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
Prpf40aQ9R1C7 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Prpf40aQ9R1C7 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Prpf40aQ9R1C7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Prpf40aQ9R1C7 Mipep-204ENSMUST00000225043 1548 ntBASIC28.66■■■□□ 2.18
Prpf40aQ9R1C7 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms