Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.53■■■□□ 2.64
Trim11Q99PQ2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Trim11Q99PQ2 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Trim11Q99PQ2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Trim11Q99PQ2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.45■■■□□ 2.63
Trim11Q99PQ2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Trim11Q99PQ2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.32■■■□□ 2.6
Trim11Q99PQ2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Trim11Q99PQ2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Trim11Q99PQ2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Trim11Q99PQ2 Rab21-202ENSMUST00000218831 843 ntBASIC31.26■■■□□ 2.59
Trim11Q99PQ2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Trim11Q99PQ2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Trim11Q99PQ2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Trim11Q99PQ2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Trim11Q99PQ2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.07■■■□□ 2.56
Trim11Q99PQ2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.06■■■□□ 2.56
Trim11Q99PQ2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim11Q99PQ2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim11Q99PQ2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim11Q99PQ2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
Trim11Q99PQ2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Trim11Q99PQ2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Trim11Q99PQ2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Trim11Q99PQ2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
Trim11Q99PQ2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Trim11Q99PQ2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
Trim11Q99PQ2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim11Q99PQ2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.9■■■□□ 2.54
Trim11Q99PQ2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.89■■■□□ 2.54
Trim11Q99PQ2 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.88■■■□□ 2.53
Trim11Q99PQ2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Trim11Q99PQ2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Trim11Q99PQ2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Trim11Q99PQ2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim11Q99PQ2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Trim11Q99PQ2 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Trim11Q99PQ2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
Trim11Q99PQ2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trim11Q99PQ2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
Trim11Q99PQ2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.76■■■□□ 2.51
Trim11Q99PQ2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Trim11Q99PQ2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Trim11Q99PQ2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Trim11Q99PQ2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Trim11Q99PQ2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
Trim11Q99PQ2 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Trim11Q99PQ2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Trim11Q99PQ2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.61■■■□□ 2.49
Trim11Q99PQ2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Trim11Q99PQ2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Trim11Q99PQ2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.6■■■□□ 2.49
Trim11Q99PQ2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim11Q99PQ2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Trim11Q99PQ2 Gm25262-201ENSMUST00000174934 133 ntBASIC30.55■■■□□ 2.48
Trim11Q99PQ2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Trim11Q99PQ2 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Trim11Q99PQ2 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Trim11Q99PQ2 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Trim11Q99PQ2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim11Q99PQ2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim11Q99PQ2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim11Q99PQ2 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Trim11Q99PQ2 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
Trim11Q99PQ2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim11Q99PQ2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim11Q99PQ2 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.22■■■□□ 2.43
Trim11Q99PQ2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Trim11Q99PQ2 Gm2415-204ENSMUST00000190235 2004 ntBASIC30.2■■■□□ 2.42
Trim11Q99PQ2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Trim11Q99PQ2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
Trim11Q99PQ2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
Trim11Q99PQ2 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
Trim11Q99PQ2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Trim11Q99PQ2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
Trim11Q99PQ2 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Trim11Q99PQ2 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Trim11Q99PQ2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
Trim11Q99PQ2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.08■■■□□ 2.41
Trim11Q99PQ2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30.07■■■□□ 2.4
Trim11Q99PQ2 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Trim11Q99PQ2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Trim11Q99PQ2 Mipep-204ENSMUST00000225043 1548 ntBASIC30.02■■■□□ 2.4
Trim11Q99PQ2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Trim11Q99PQ2 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.99■■■□□ 2.39
Trim11Q99PQ2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Trim11Q99PQ2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.98■■■□□ 2.39
Trim11Q99PQ2 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Trim11Q99PQ2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
Trim11Q99PQ2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Trim11Q99PQ2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Trim11Q99PQ2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Trim11Q99PQ2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
Trim11Q99PQ2 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC29.88■■■□□ 2.37
Trim11Q99PQ2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Trim11Q99PQ2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Trim11Q99PQ2 Gm17082-201ENSMUST00000166043 1091 ntBASIC29.86■■■□□ 2.37
Trim11Q99PQ2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Trim11Q99PQ2 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29.85■■■□□ 2.37
Trim11Q99PQ2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms