Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
Cchcr1Q8K2I2 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Cchcr1Q8K2I2 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32.74■■■□□ 2.83
Cchcr1Q8K2I2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
Cchcr1Q8K2I2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Cchcr1Q8K2I2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.54■■■□□ 2.8
Cchcr1Q8K2I2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.45■■■□□ 2.79
Cchcr1Q8K2I2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Cchcr1Q8K2I2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC32.41■■■□□ 2.78
Cchcr1Q8K2I2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32.41■■■□□ 2.78
Cchcr1Q8K2I2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Cchcr1Q8K2I2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
Cchcr1Q8K2I2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Cchcr1Q8K2I2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Cchcr1Q8K2I2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC32.29■■■□□ 2.76
Cchcr1Q8K2I2 Rab21-202ENSMUST00000218831 843 ntBASIC32.27■■■□□ 2.76
Cchcr1Q8K2I2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC32.26■■■□□ 2.76
Cchcr1Q8K2I2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Cchcr1Q8K2I2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
Cchcr1Q8K2I2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Cchcr1Q8K2I2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Cchcr1Q8K2I2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
Cchcr1Q8K2I2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Cchcr1Q8K2I2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Cchcr1Q8K2I2 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Cchcr1Q8K2I2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Cchcr1Q8K2I2 Zfp131-207ENSMUST00000224946 1783 ntBASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.04■■■□□ 2.72
Cchcr1Q8K2I2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Cchcr1Q8K2I2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.99■■■□□ 2.71
Cchcr1Q8K2I2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
Cchcr1Q8K2I2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.96■■■□□ 2.71
Cchcr1Q8K2I2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Cchcr1Q8K2I2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Cchcr1Q8K2I2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Cchcr1Q8K2I2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Cchcr1Q8K2I2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Cchcr1Q8K2I2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Cchcr1Q8K2I2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Cchcr1Q8K2I2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cchcr1Q8K2I2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cchcr1Q8K2I2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.77■■■□□ 2.68
Cchcr1Q8K2I2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Cchcr1Q8K2I2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Cchcr1Q8K2I2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cchcr1Q8K2I2 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
Cchcr1Q8K2I2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.71■■■□□ 2.67
Cchcr1Q8K2I2 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Cchcr1Q8K2I2 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Cchcr1Q8K2I2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Cchcr1Q8K2I2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cchcr1Q8K2I2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cchcr1Q8K2I2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Cchcr1Q8K2I2 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Cchcr1Q8K2I2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cchcr1Q8K2I2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Cchcr1Q8K2I2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Cchcr1Q8K2I2 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.46■■■□□ 2.63
Cchcr1Q8K2I2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Cchcr1Q8K2I2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Cchcr1Q8K2I2 Gm25262-201ENSMUST00000174934 133 ntBASIC31.43■■■□□ 2.62
Cchcr1Q8K2I2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Cchcr1Q8K2I2 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Cchcr1Q8K2I2 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Cchcr1Q8K2I2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Cchcr1Q8K2I2 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
Cchcr1Q8K2I2 AL845457.1-201ENSMUST00000197244 68 ntBASIC31.28■■■□□ 2.6
Cchcr1Q8K2I2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cchcr1Q8K2I2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.26■■■□□ 2.59
Cchcr1Q8K2I2 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.25■■■□□ 2.59
Cchcr1Q8K2I2 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cchcr1Q8K2I2 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Cchcr1Q8K2I2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Cchcr1Q8K2I2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cchcr1Q8K2I2 Mipep-204ENSMUST00000225043 1548 ntBASIC31.13■■■□□ 2.57
Cchcr1Q8K2I2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cchcr1Q8K2I2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cchcr1Q8K2I2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cchcr1Q8K2I2 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cchcr1Q8K2I2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
Cchcr1Q8K2I2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Cchcr1Q8K2I2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cchcr1Q8K2I2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cchcr1Q8K2I2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.01■■■□□ 2.55
Cchcr1Q8K2I2 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Cchcr1Q8K2I2 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.98■■■□□ 2.55
Cchcr1Q8K2I2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Cchcr1Q8K2I2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cchcr1Q8K2I2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.96■■■□□ 2.55
Cchcr1Q8K2I2 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
Cchcr1Q8K2I2 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 8.2 ms